A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3580049



Internal ID18361561
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:2136684..2148742hg38UCSC Ensembl
Innerchr12:2245850..2257908hg19UCSC Ensembl
Cytoband12p13.33
Allele length
AssemblyAllele length
hg3812059
hg1912059
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv439e212
Supporting Variantsessv9799645, essv9799642, essv9799639, essv9799640, essv9799641
Samples400655WB, 402019MC, 400588BE, 401234MB, 401543DC
Known GenesCACNA1C
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3580049
Frequency
Sample Size873
Observed Gain0
Observed Loss5
Observed Complex0
Frequencyn/a


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