A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3580014



Internal ID18361526
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:756557..764765hg38UCSC Ensembl
Innerchr12:865723..873931hg19UCSC Ensembl
Cytoband12p13.33
Allele length
AssemblyAllele length
hg388209
hg198209
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv431e212
Supporting Variantsessv9799404, essv9799406, essv9799403, essv9799405
Samples400620MT, 400082SD, 401864CV, 400177CG
Known GenesWNK1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3580014
Frequency
Sample Size873
Observed Gain0
Observed Loss4
Observed Complex0
Frequencyn/a


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