A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3579975



Internal ID18708173
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr11:131910033..131917441hg38UCSC Ensembl
Innerchr11:131779927..131787335hg19UCSC Ensembl
Cytoband11q25
Allele length
AssemblyAllele length
hg387409
hg197409
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv424e212
Supporting Variantsessv9799210, essv9799207, essv9799208, essv9799204, essv9799205, essv9799206, essv9799203, essv9799209
Samples401380OL, 400227MM, 401386WA, 400383HL, 401862AN, 400168HC, 400103BN, 400677HD
Known GenesNTM
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3579975
Frequency
Sample Size873
Observed Gain0
Observed Loss8
Observed Complex0
Frequencyn/a


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