Variant DetailsVariant: esv3579924 | Internal ID | 18708122 | | Landmark | | | Location Information | | | Cytoband | 11q23.3 | | Allele length | | Assembly | Allele length | | hg38 | 14079 | | hg19 | 14079 |
| | Variant Type | CNV loss | | Copy Number | | | Allele State | | | Allele Origin | | | Probe Count | | | Validation Flag | | | Merged Status | M | | Merged Variants | dgv417e212 | | Supporting Variants | essv9798954, essv9798929, essv9798951, essv9798880, essv9798918, essv9798892, essv9798968, essv9798907, essv9798894, essv9798877, essv9798873, essv9798941, essv9798963, essv9798914, essv9798957, essv9798935, essv9798938, essv9798960, essv9798908, essv9798959, essv9798913, essv9798964, essv9798958, essv9798897, essv9798891, essv9798943, essv9798956, essv9798910, essv9798967, essv9798903, essv9798912, essv9798934, essv9798896, essv9798901, essv9798939, essv9798917, essv9798945, essv9798953, essv9798905, essv9798962, essv9798875, essv9798893, essv9798906, essv9798936, essv9798928, essv9798915, essv9798921, essv9798887, essv9798961, essv9798895, essv9798886, essv9798884, essv9798899, essv9798898, essv9798937, essv9798890, essv9798950, essv9798924, essv9798885, essv9798902, essv9798904, essv9798942, essv9798881, essv9798874, essv9798876, essv9798909, essv9798949, essv9798940, essv9798925, essv9798879, essv9798920, essv9798882, essv9798888, essv9798946, essv9798932, essv9798927, essv9798872, essv9798948, essv9798965, essv9798926, essv9798883, essv9798916, essv9798930, essv9798931, essv9798947, essv9798952, essv9798919 | | Samples | 400359OR, 400927BD, 400599CP, 400439IM, 400739SS, 400619MP, 401385BB, 400313DF, 401299ST, 400272AE, 400221VM, 401927SK, 401195PN, 400553PP, 401820SD, 401556KR, 400948EV, 401536BD, 401030GI, 400953MR, 401064FR, 401926MR, 401297KC, 401006ES, 401239PR, 400882DD, 401908YM, 400583HS, 400320RN, 400033KC, 400307HW, 400356MC, 401766MR, 400427SD, 401550SP, 400353ML, 401495NR, 401198TI, 401818PC, 401013GJ, 400413FJ, 401050GS, 401505WI, 401939GD, 401913GT, 400977SC, 401717LP, 401357MH, 400960TN, 401862AN, 401423BA, 401813DN, 401506LK, 401619BT, 402022SM, 401892MJ, 400387HE, 400047DS, 401919MD, 402074RR, 401580CA, 401795SP, 401874DJ, 401259LS, 401700BN, 400788PV, 400430KV, 400177CG, 401616WP, 400818BL, 400201PK, 401535RJ, 401496SL, 400156WT, 401847RK, 401786WD, 401661HD, 400971MK, 401143LK, 401797LS, 400130HA, 400084DM, 400508RD, 400266BA, 400581VJ, 401480PG, 401207DA | | Known Genes | | | Method | SNP array | | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | | Platform | Affymetrix CytoScan HD 2.7M array | | Comments | | | Reference | Uddin_et_al_2014 | | Pubmed ID | 25503493 | | Accession Number(s) | esv3579924
| | Frequency | | Sample Size | 873 | | Observed Gain | 0 | | Observed Loss | 87 | | Observed Complex | 0 | | Frequency | n/a |
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