A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3579734



Internal ID18707932
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr11:61200265..61248321hg38UCSC Ensembl
Innerchr11:60967737..61015793hg19UCSC Ensembl
Cytoband11q12.2
Allele length
AssemblyAllele length
hg3848057
hg1948057
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9798275, essv9798281, essv9798276, essv9798283, essv9798273, essv9798280, essv9798274, essv9798282, essv9798278, essv9798279
Samples402054BD, 400721DJ, 401778CB, 400728PB, 400053LE, 401054VM, 400859SC, 400205SP, 401040KM, 401395OP
Known GenesPGA3, PGA4, PGA5
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3579734
Frequency
Sample Size873
Observed Gain0
Observed Loss10
Observed Complex0
Frequencyn/a


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