A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3579733



Internal ID18361245
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr11:60769381..60779254hg38UCSC Ensembl
Innerchr11:60536854..60546727hg19UCSC Ensembl
Cytoband11q12.2
Allele length
AssemblyAllele length
hg389874
hg199874
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9798272
Samples401196CR
Known GenesMS4A15
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3579733
Frequency
Sample Size873
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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