A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3579629



Internal ID18361141
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr11:55606700..55674829hg38UCSC Ensembl
Innerchr11:55374176..55442305hg19UCSC Ensembl
Cytoband11q11
Allele length
AssemblyAllele length
hg3868130
hg1968130
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv368e212
Supporting Variantsessv9797903, essv9797906, essv9797901, essv9797909, essv9797898, essv9797902, essv9797899
Samples401030GI, 401133JG, 401013GJ, 401067BD, 401391PJ, 401882CR, 400300SD
Known GenesOR4C6, OR4P4, OR4S2
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3579629
Frequency
Sample Size873
Observed Gain0
Observed Loss7
Observed Complex0
Frequencyn/a


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