A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3579615



Internal ID18361127
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr11:55606543..55685084hg38UCSC Ensembl
Innerchr11:55374019..55452560hg19UCSC Ensembl
Cytoband11q11
Allele length
AssemblyAllele length
hg3878542
hg1978542
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv368e212
Supporting Variantsessv9797750, essv9797745, essv9797752, essv9797747, essv9797728, essv9797738, essv9797735
Samples401956DQ, 401824MM, 400722OM, 401607LL, 400108BJ, 402042BJ, 400982BS
Known GenesOR4C6, OR4P4, OR4S2
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3579615
Frequency
Sample Size873
Observed Gain0
Observed Loss7
Observed Complex0
Frequencyn/a


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