A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3579397



Internal ID18360909
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr11:18072696..18078202hg38UCSC Ensembl
Innerchr11:18094243..18099749hg19UCSC Ensembl
Cytoband11p15.1
Allele length
AssemblyAllele length
hg385507
hg195507
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9796405, essv9796406, essv9796403, essv9796402, essv9796404, essv9796401
Samples401498HH, 401278DM, 400888MS, 401067BD, 401182OC, 401763SG
Known Genes
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3579397
Frequency
Sample Size873
Observed Gain0
Observed Loss6
Observed Complex0
Frequencyn/a


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