A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3579369



Internal ID18360881
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr11:11853475..11861994hg38UCSC Ensembl
Innerchr11:11875022..11883541hg19UCSC Ensembl
Cytoband11p15.3
Allele length
AssemblyAllele length
hg388520
hg198520
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9796149, essv9796158, essv9796174, essv9796153, essv9796161, essv9796150, essv9796172, essv9796154, essv9796152, essv9796157, essv9796171, essv9796173, essv9796164, essv9796168, essv9796151, essv9796167, essv9796169, essv9796148, essv9796170, essv9796147, essv9796163, essv9796146, essv9796159, essv9796160, essv9796175, essv9796156, essv9796162, essv9796165
Samples401275SJ, 401074CM, 400083TG, 400225CJ, 401926MR, 400227MM, 400343BD, 401401BA, 400374LB, 400038CK, 400955BE, 401606CG, 400047DS, 401067BD, 400598DA, 400329HJ, 400030WD, 401428LD, 400103BN, 402051AF, 400295PS, 401054VM, 402008MC, 401912HD, 400173KP, 401882CR, 400138LA, 400782IE
Known GenesUSP47
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3579369
Frequency
Sample Size873
Observed Gain0
Observed Loss28
Observed Complex0
Frequencyn/a


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