Variant DetailsVariant: esv3579268 | Internal ID | 18707466 | | Landmark | | | Location Information | | | Cytoband | 11p15.4 | | Allele length | | Assembly | Allele length | | hg38 | 12319 | | hg19 | 12319 |
| | Variant Type | CNV loss | | Copy Number | | | Allele State | | | Allele Origin | | | Probe Count | | | Validation Flag | | | Merged Status | M | | Merged Variants | dgv310e212 | | Supporting Variants | essv9795580, essv9795595, essv9795591, essv9795571, essv9795579, essv9795606, essv9795586, essv9795604, essv9795597, essv9795575, essv9795581, essv9795594, essv9795574, essv9795584, essv9795587, essv9795590, essv9795598, essv9795605, essv9795570, essv9795583, essv9795603, essv9795599, essv9795572, essv9795602, essv9795576, essv9795596, essv9795568, essv9795601, essv9795593, essv9795569, essv9795577, essv9795566, essv9795585, essv9795573, essv9795592, essv9795588, essv9795582 | | Samples | 401986LC, 400313DF, 401487FW, 400995MS, 400949AM, 401096SL, 401434VN, 400340CD, 400227MM, 400743LS, 400503HD, 400134WK, 400817MB, 400060MC, 400413FJ, 401785MJ, 401589HP, 401862AN, 401771OS, 401630MK, 401506LK, 4000657TM, 401606CG, 400888MS, 401778CB, 400136DM, 400601WC, 400069CN, 401287CF, 400769SL, 401105WS, 400013TA, 401341TS, 401612HB, 400152MR, 400269DA, 401102RD | | Known Genes | OR51B5 | | Method | SNP array | | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | | Platform | Affymetrix CytoScan HD 2.7M array | | Comments | | | Reference | Uddin_et_al_2014 | | Pubmed ID | 25503493 | | Accession Number(s) | esv3579268
| | Frequency | | Sample Size | 873 | | Observed Gain | 0 | | Observed Loss | 37 | | Observed Complex | 0 | | Frequency | n/a |
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