A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3579098



Internal ID18360610
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:104001706..104005092hg38UCSC Ensembl
Innerchr10:105761464..105764850hg19UCSC Ensembl
Cytoband10q24.33
Allele length
AssemblyAllele length
hg383387
hg193387
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9794740, essv9794743, essv9794747, essv9794746, essv9794742, essv9794745, essv9794738, essv9794739, essv9794741, essv9794736, essv9794737
Samples400336BG, 400594VJ, 401195PN, 400441GS, 401303FM, 400515ZG, 400660GK, 401595BL, 401025SM, 400759FV, 401912HD
Known GenesSLK
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3579098
Frequency
Sample Size873
Observed Gain0
Observed Loss11
Observed Complex0
Frequencyn/a


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