A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3579028



Internal ID18360540
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr11:55606700..55685520hg38UCSC Ensembl
Innerchr11:55374176..55452996hg19UCSC Ensembl
Cytoband11q11
Allele length
AssemblyAllele length
hg3878821
hg1978821
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv369e212
Supporting Variantsessv9797914, essv9797913, essv9797915, essv9797920
Samples400307HW, 400338SR, 400381CA, 401859GS
Known GenesOR4C6, OR4P4, OR4S2
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3579028
Frequency
Sample Size873
Observed Gain4
Observed Loss0
Observed Complex0
Frequencyn/a


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