A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3578977



Internal ID18360489
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:77427669..77432415hg38UCSC Ensembl
Innerchr10:79187427..79192173hg19UCSC Ensembl
Cytoband10q22.3
Allele length
AssemblyAllele length
hg384747
hg194747
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9794334, essv9794335, essv9794332
Samples401801LA, 401308LD, 400091BS
Known GenesKCNMA1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3578977
Frequency
Sample Size873
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer