Variant DetailsVariant: esv3578904 Internal ID | 18360416 | Landmark | | Location Information | | Cytoband | 11q11 | Allele length | Assembly | Allele length | hg38 | 68287 | hg19 | 68287 |
| Variant Type | CNV gain | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | dgv369e212 | Supporting Variants | essv9797707, essv9797704, essv9797651, essv9797709, essv9797682, essv9797700, essv9797661, essv9797703, essv9797669, essv9797695, essv9797683, essv9797664, essv9797673, essv9797668, essv9797705, essv9797672, essv9797685, essv9797660, essv9797714, essv9797696, essv9797718, essv9797657, essv9797652, essv9797697, essv9797665, essv9797656, essv9797690, essv9797681, essv9797684, essv9797674, essv9797689, essv9797678, essv9797715, essv9797671, essv9797670, essv9797717, essv9797691, essv9797667, essv9797662, essv9797654, essv9797680, essv9797711, essv9797708, essv9797701, essv9797713, essv9797706, essv9797658 | Samples | 401191MI, 400063BR, 400534ME, 400789KV, 401734PG, 401592NR, 401487FW, 400294HD, 400574MA, 401841OB, 401899MB, 401442WR, 400730SH, 401918CA, 400425SL, 400379BB, 401906DT, 400564SN, 401994BD, 400218WK, 400282RA, 400383HL, 400663MD, 401251WN, 401589HP, 400122PL, 401822TL, 401348RB, 401730MS, 401771OS, 400124FR, 400047DS, 400603CJ, 402074RR, 400721DJ, 400695PH, 401700BN, 400454RE, 401203MP, 400158FB, 400103BN, 400410CD, 402048WB, 401809FU, 400778SR, 400525MR, 400785AK | Known Genes | OR4C6, OR4P4, OR4S2 | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | esv3578904
| Frequency | Sample Size | 873 | Observed Gain | 47 | Observed Loss | 0 | Observed Complex | 0 | Frequency | n/a |
|
|