Variant DetailsVariant: esv3578893 Internal ID | 18360405 | Landmark | | Location Information | | Cytoband | 11q11 | Allele length | Assembly | Allele length | hg38 | 76499 | hg19 | 76499 |
| Variant Type | CNV gain | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | dgv369e212 | Supporting Variants | essv9797967, essv9797964, essv9797963, essv9797965, essv9797968 | Samples | 401020DJ, 400101EH, 400246MG, 401277RA, 400213DB | Known Genes | OR4C6, OR4P4, OR4S2 | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | esv3578893
| Frequency | Sample Size | 873 | Observed Gain | 5 | Observed Loss | 0 | Observed Complex | 0 | Frequency | n/a |
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