A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3578643



Internal ID18360155
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:13014622..13016863hg38UCSC Ensembl
Innerchr10:13056622..13058863hg19UCSC Ensembl
Cytoband10p13
Allele length
AssemblyAllele length
hg382242
hg192242
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9792246, essv9792247, essv9792244
Samples400376SJ, 401969DR, 400127MD
Known GenesCCDC3
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3578643
Frequency
Sample Size873
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


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