Variant DetailsVariant: esv3578614 | Internal ID | 18706812 | | Landmark | | | Location Information | | | Cytoband | 10p14 | | Allele length | | Assembly | Allele length | | hg38 | 6387 | | hg19 | 6387 |
| | Variant Type | CNV loss | | Copy Number | | | Allele State | | | Allele Origin | | | Probe Count | | | Validation Flag | | | Merged Status | M | | Merged Variants | | | Supporting Variants | essv9792061, essv9792040, essv9792043, essv9792038, essv9792069, essv9792141, essv9792081, essv9792110, essv9792124, essv9792094, essv9792131, essv9792057, essv9792112, essv9792037, essv9792076, essv9792029, essv9792140, essv9792036, essv9792064, essv9792128, essv9792101, essv9792059, essv9792058, essv9792113, essv9792075, essv9792024, essv9792031, essv9792092, essv9792104, essv9792049, essv9792127, essv9792070, essv9792028, essv9792116, essv9792132, essv9792048, essv9792098, essv9792142, essv9792050, essv9792120, essv9792030, essv9792114, essv9792107, essv9792052, essv9792134, essv9792087, essv9792062, essv9792068, essv9792042, essv9792026, essv9792065, essv9792136, essv9792121, essv9792149, essv9792119, essv9792047, essv9792108, essv9792035, essv9792073, essv9792032, essv9792130, essv9792147, essv9792084, essv9792045, essv9792125, essv9792091, essv9792135, essv9792096, essv9792027, essv9792123, essv9792129, essv9792118, essv9792093, essv9792046, essv9792034, essv9792109, essv9792137, essv9792090, essv9792079, essv9792105, essv9792025, essv9792041, essv9792146, essv9792106, essv9792080, essv9792083, essv9792072, essv9792145, essv9792051, essv9792053, essv9792126, essv9792056, essv9792086, essv9792097, essv9792054, essv9792099, essv9792095, essv9792078, essv9792139, essv9792060, essv9792071, essv9792102, essv9792067, essv9792103, essv9792082, essv9792063, essv9792138, essv9792074, essv9792143, essv9792039, essv9792115, essv9792148, essv9792117, essv9792085 | | Samples | 401459HF, 400920MK, 400247CL, 400359OR, 400701MM, 400534ME, 401052BM, 400432VA, 400572PJ, 400336BG, 401487FW, 401380OL, 401518VK, 400221VM, 401966SR, 400141CC, 401195PN, 400629BM, 401820SD, 400199SA, 401674DD, 401368WR, 400937OR, 400441GS, 400379BB, 401936BA, 401551MB, 401906DT, 401792KR, 400482MD, 401006ES, 402065BG, 402038MR, 400148MS, 400073HT, 400320RN, 400033KC, 400368SD, 400871CM, 400348DK, 401155ML, 401550SP, 401038LN, 400206SC, 400564SN, 401994BD, 401133JG, 401791FG, 401238QR, 401353BC, 401013GJ, 401785MJ, 400577MK, 401726LW, 400352CA, 400615RI, 401397WN, 400974PS, 401084TD, 401499JR, 400040CN, 401540NA, 400783MJ, 401717LP, 401454CD, 400967PK, 401423BA, 400914ER, 401968HL, 401586RS, 401618HR, 4000657TM, 400844GP, 400686BM, 401729AC, 400886MP, 400639RP, 400846MC, 402074RR, 401795SP, 400258BC, 401200BD, 400571WV, 401176BD, 401182OC, 400378HL, 400329HJ, 400168HC, 401203MP, 400732MA, 401898DS, 400722OM, 400295PS, 401010HT, 400759FV, 400235MP, 400267GD, 401861GG, 402008MC, 401056TJ, 401215MJ, 401781SL, 400130HA, 401154BR, 400108BJ, 401735LE, 400661AD, 400150SS, 401969DR, 401341TS, 400012CJ, 401517PR, 400243CK, 401246HH | | Known Genes | | | Method | SNP array | | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | | Platform | Affymetrix CytoScan HD 2.7M array | | Comments | | | Reference | Uddin_et_al_2014 | | Pubmed ID | 25503493 | | Accession Number(s) | esv3578614
| | Frequency | | Sample Size | 873 | | Observed Gain | 0 | | Observed Loss | 114 | | Observed Complex | 0 | | Frequency | n/a |
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