A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3578593



Internal ID18706791
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:4605491..4610627hg38UCSC Ensembl
Innerchr10:4647683..4652819hg19UCSC Ensembl
Cytoband10p15.1
Allele length
AssemblyAllele length
hg385137
hg195137
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv171e212
Supporting Variantsessv9791976, essv9791979, essv9791972, essv9791973, essv9791981, essv9791969, essv9791970, essv9791982, essv9791974, essv9791975, essv9791971, essv9791980, essv9791984, essv9791983
Samples401212HJ, 400821FE, 401355CD, 400528LR, 401924ST, 400631SJ, 401908YM, 401540NA, 401652HL, 400758KP, 401444LD, 401543DC, 401882CR, 400300SD
Known Genes
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3578593
Frequency
Sample Size873
Observed Gain0
Observed Loss14
Observed Complex0
Frequencyn/a


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