A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3578306



Internal ID18706504
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:184173634..184184411hg38UCSC Ensembl
Innerchr1:184142768..184153545hg19UCSC Ensembl
Cytoband1q25.3
Allele length
AssemblyAllele length
hg3810778
hg1910778
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv124e212
Supporting Variantsessv9799299, essv9798455, essv9798854, essv9798610, essv9799255, essv9798599, essv9798889, essv9798510, essv9799000, essv9799011, essv9799355, essv9798577, essv9798755, essv9798721, essv9799133, essv9798810, essv9798766, essv9799155, essv9798732, essv9799388, essv9798555, essv9798544, essv9798966, essv9798955, essv9799033, essv9799422, essv9798821, essv9799266, essv9799111, essv9798621, essv9799122, essv9799100, essv9799311, essv9799244, essv9799433, essv9799022, essv9798588, essv9798843, essv9798878, essv9798632, essv9798788, essv9798499, essv9798777, essv9798710, essv9798900, essv9798655, essv9799188, essv9799089, essv9798911, essv9798978, essv9798944, essv9799044, essv9799344, essv9798533, essv9799077, essv9798521, essv9799166, essv9798666, essv9799211, essv9799444, essv9799277, essv9799200, essv9798477, essv9798989, essv9798832, essv9798644, essv9798922, essv9798488, essv9798743, essv9798688, essv9798566, essv9799177, essv9799366, essv9799144, essv9799222, essv9799399, essv9799377, essv9798466, essv9798933, essv9799410, essv9798799, essv9798677, essv9799055, essv9799288, essv9799233, essv9799333, essv9799322, essv9798867, essv9799066, essv9798699
Samples400911GA, 400701MM, 401162TM, 400618GC, 401146US, 400554WB, 400572PJ, 400876OG, 401235IA, 400683EC, 401742KB, 401079HJ, 400655WB, 400325BE, 401603HH, 401536BD, 400453LN, 400953MR, 400893ZE, 400674CA, 400606HW, 401926MR, 401792KR, 402038MR, 400033KC, 401252AE, 400650RM, 400609FJ, 401495NR, 400333CC, 402056KD, 400582WS, 400218WK, 401013GJ, 400793BR, 400663MD, 400038CK, 400416KA, 400974PS, 401939GD, 401274PA, 400110MD, 401589HP, 401913GT, 400838AM, 401950MD, 400285FA, 401210PB, 400914ER, 400082SD, 400994HJ, 401864CV, 401879HJ, 401730MS, 401504RJ, 401444LD, 401017SC, 400006DK, 400371GA, 401711WS, 401307VR, 401700BN, 400430KV, 401677MM, 401616WP, 401608GE, 400156WT, 401844ZD, 401894PD, 400235MP, 401661HD, 400128MJ, 400410CD, 402048WB, 401149VA, 401358VP, 400525MR, 400177SJ, 401354KM, 401728WK, 400833BB, 401458RT, 400266BA, 400079AP, 400209BS, 401254AE, 400942HR, 400668TD, 400704LC, 401482CB
Known Genes
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3578306
Frequency
Sample Size873
Observed Gain0
Observed Loss90
Observed Complex0
Frequencyn/a


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