A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3578245



Internal ID18706443
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:169246861..169269246hg38UCSC Ensembl
Innerchr1:169216099..169238484hg19UCSC Ensembl
Cytoband1q24.2
Allele length
AssemblyAllele length
hg3822386
hg1922386
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv112e212
Supporting Variantsessv9794288, essv9794277, essv9794522, essv9794511, essv9794578, essv9794233, essv9794399, essv9794222, essv9794545, essv9794311, essv9794567, essv9794489, essv9794434, essv9794366, essv9794445, essv9794333, essv9794500, essv9794344, essv9794478, essv9794322, essv9794589, essv9794534, essv9794299, essv9794456, essv9794388, essv9794377, essv9794423, essv9794244, essv9794410, essv9794355, essv9794266, essv9794556, essv9794255, essv9794467
Samples401366WD, 400570RW, 400569WC, 401302LJ, 401856GC, 400629BM, 401426WD, 400627CC, 400600DP, 401364NA, 400749VW, 401664SD, 401550SP, 401376RD, 400383HL, 400040CN, 401454CD, 400076LC, 4000657TM, 400050RL, 400547BS, 400047DS, 400242TP, 400869BK, 400598DA, 400168HC, 400677HD, 401010HT, 401287CF, 400410CD, 400792RE, 401341TS, 400300SD, 401246HH
Known GenesNME7
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3578245
Frequency
Sample Size873
Observed Gain0
Observed Loss34
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer