A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3577786



Internal ID18705984
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:23631329..23633617hg38UCSC Ensembl
Innerchr1:23957819..23960107hg19UCSC Ensembl
Cytoband1p36.11
Allele length
AssemblyAllele length
hg382289
hg192289
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv25e212
Supporting Variantsessv9822977, essv9823311, essv9823977, essv9822866, essv9823644, essv9822755, essv9822200, essv9823755, essv9823088, essv9823533, essv9821754, essv9822087, essv9822644, essv9821865, essv9821976, essv9820643, essv9821532, essv9821199, essv9823422, essv9821310, essv9821643, essv9820976, essv9820865, essv9824088, essv9822311, essv9822533, essv9823199, essv9820754, essv9821421, essv9822422, essv9820532, essv9823866, essv9824199, essv9821088
Samples400599CP, 400987FB, 401640WJ, 401489CB, 400512LR, 401380OL, 400995MS, 400506GN, 400191MP, 400241CP, 400528LR, 400674CA, 400503HD, 400203NA, 400206SC, 401198TI, 401646MC, 400270BD, 400198MD, 401873BK, 401939GD, 400496BL, 400758KP, 401563TK, 400686BM, 401504RJ, 401952UH, 400201PK, 401894PD, 401858TP, 401152MV, 400271SR, 401105WS, 401177SL
Known GenesMDS2
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3577786
Frequency
Sample Size873
Observed Gain0
Observed Loss34
Observed Complex0
Frequencyn/a


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