A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3577752



Internal ID18359264
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:16539300..16959771hg38UCSC Ensembl
Innerchr1:16865795..17286266hg19UCSC Ensembl
Cytoband1p36.13
Allele length
AssemblyAllele length
hg38420472
hg19420472
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9800533, essv9800644, essv9800755, essv9800866, essv9800977, essv9800311, essv9801200, essv9801089, essv9800422
Samples400352CA, 401027KW, 400285FA, 401506LK, 401288LD, 401012TP, 400863SS, 400205SP, 401517PR
Known GenesCROCC, CROCCP2, ESPNP, LOC729574, MIR3675, MST1L, MST1P2, NBPF1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3577752
Frequency
Sample Size873
Observed Gain0
Observed Loss9
Observed Complex0
Frequencyn/a


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