A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3577723



Internal ID18705921
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:9532982..9542302hg38UCSC Ensembl
Innerchr1:9593041..9602360hg19UCSC Ensembl
Cytoband1p36.22
Allele length
AssemblyAllele length
hg389321
hg199320
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9794755, essv9794422, essv9794310, essv9795199, essv9794644, essv9795088, essv9794866, essv9795421, essv9795310, essv9794977, essv9794533
Samples400987FB, 401852SK, 400425SL, 400773GS, 401353BC, 400724CD, 400712GC, 400859SC, 400323AA, 401266HM, 400079AP
Known GenesSLC25A33
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3577723
Frequency
Sample Size873
Observed Gain0
Observed Loss11
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer