A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3577704



Internal ID18359216
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:3223715..3236859hg38UCSC Ensembl
Innerchr1:3140279..3153423hg19UCSC Ensembl
Cytoband1p36.32
Allele length
AssemblyAllele length
hg3813145
hg1913145
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv7e212
Supporting Variantsessv9785421, essv9784977, essv9785310, essv9785533, essv9785088, essv9785199
Samples401165SB, 400076LC, 401551MB, 400893ZE, 400574MA, 400650RM
Known GenesPRDM16
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3577704
Frequency
Sample Size873
Observed Gain0
Observed Loss6
Observed Complex0
Frequencyn/a


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