A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3577603



Internal ID18359115
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
InnerchrY:23701860..24141916hg38UCSC Ensembl
InnerchrY:25848007..26288063hg19UCSC Ensembl
CytobandYq11.223
Allele length
AssemblyAllele length
hg38440057
hg19440057
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv2564e212
Supporting Variantsessv9834514, essv9834513
Samples401489CB, 400606HW
Known GenesCDY1, CDY1B, TTTY3, TTTY3B
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3577603
Frequency
Sample Size873
Observed Gain2
Observed Loss0
Observed Complex0
Frequencyn/a


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