A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3577438



Internal ID18358950
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:76493508..76502424hg38UCSC Ensembl
Innerchr10:78253266..78262182hg19UCSC Ensembl
Cytoband10q22.3
Allele length
AssemblyAllele length
hg388917
hg198917
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv253e212
Supporting Variantsessv9794162, essv9794154, essv9794171, essv9794156, essv9794152, essv9794158, essv9794173, essv9794163, essv9794169, essv9794164, essv9794165, essv9794170, essv9794161, essv9794159, essv9794168, essv9794167, essv9794157, essv9794172, essv9794153, essv9794160
Samples400911GA, 400534ME, 400802DP, 401385BB, 401151RJ, 401918CA, 400937OR, 400148MS, 400478WE, 401234MB, 400929MM, 401726LW, 400352CA, 400955BE, 401587RC, 400571WV, 401914PR, 400586RD, 401458RT, 401068SD
Known GenesC10orf11
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3577438
Frequency
Sample Size873
Observed Gain20
Observed Loss0
Observed Complex0
Frequencyn/a


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