Variant DetailsVariant: esv3577427 | Internal ID | 18358939 | | Landmark | | | Location Information | | | Cytoband | 10q22.3 | | Allele length | | Assembly | Allele length | | hg38 | 11864 | | hg19 | 11864 |
| | Variant Type | CNV gain | | Copy Number | | | Allele State | | | Allele Origin | | | Probe Count | | | Validation Flag | | | Merged Status | M | | Merged Variants | dgv254e212 | | Supporting Variants | essv9794251, essv9794206, essv9794212, essv9794248, essv9794224, essv9794231, essv9794236, essv9794197, essv9794235, essv9794195, essv9794189, essv9794183, essv9794247, essv9794185, essv9794218, essv9794192, essv9794238, essv9794213, essv9794223, essv9794207, essv9794178, essv9794253, essv9794226, essv9794208, essv9794219, essv9794249, essv9794176, essv9794203, essv9794194, essv9794221, essv9794193, essv9794261, essv9794198, essv9794254, essv9794230, essv9794257, essv9794239, essv9794262, essv9794184, essv9794190, essv9794215, essv9794258, essv9794228, essv9794240, essv9794220, essv9794217, essv9794241, essv9794210, essv9794259, essv9794237, essv9794246, essv9794205, essv9794196, essv9794214, essv9794175, essv9794245, essv9794180, essv9794186, essv9794252, essv9794204, essv9794234, essv9794182, essv9794201, essv9794174, essv9794191, essv9794216, essv9794243, essv9794242, essv9794250, essv9794229, essv9794225, essv9794202, essv9794209, essv9794232, essv9794187, essv9794227, essv9794181, essv9794256, essv9794179, essv9794260 | | Samples | 401806DL, 400364SS, 400987FB, 400512LR, 400294HD, 401498HH, 401321CE, 401427CB, 401927SK, 400655WB, 400595CP, 401491BB, 400553PP, 401096SL, 400077EB, 401949MN, 401733CG, 401820SD, 401824MM, 400493KH, 401551MB, 401064FR, 401975VD, 400674CA, 400606HW, 401842BJ, 400482MD, 400631SJ, 401780BB, 401239PR, 400526DR, 400749VW, 400374LB, 401818PC, 400717BD, 402029KJ, 400582WS, 400411TG, 400577MK, 400825TW, 401085LA, 400416KA, 400870KC, 401540NA, 401589HP, 400977SC, 400783MJ, 400660GK, 400093BL, 401862AN, 400381CA, 401864CV, 401475MK, 400265LK, 4000657TM, 401981GF, 401795SP, 401176BD, 400329HJ, 400430KV, 400654YW, 401025SM, 401894PD, 400501SJ, 401149VA, 400719TM, 402073LQ, 400785AK, 400130HA, 402042BJ, 400266BA, 400581VJ, 401510DG, 401480PG, 401517PR, 401993HM, 401066MM, 400255CD, 400532MH, 401497PR | | Known Genes | C10orf11 | | Method | SNP array | | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | | Platform | Affymetrix CytoScan HD 2.7M array | | Comments | | | Reference | Uddin_et_al_2014 | | Pubmed ID | 25503493 | | Accession Number(s) | esv3577427
| | Frequency | | Sample Size | 873 | | Observed Gain | 80 | | Observed Loss | 0 | | Observed Complex | 0 | | Frequency | n/a |
|
|
