Variant DetailsVariant: esv3577416 | Internal ID | 18358928 | | Landmark | | | Location Information | | | Cytoband | 10q22.3 | | Allele length | | Assembly | Allele length | | hg38 | 7307 | | hg19 | 7307 |
| | Variant Type | CNV gain | | Copy Number | | | Allele State | | | Allele Origin | | | Probe Count | | | Validation Flag | | | Merged Status | M | | Merged Variants | dgv253e212 | | Supporting Variants | essv9793998, essv9794029, essv9794010, essv9794038, essv9793986, essv9793996, essv9793972, essv9794027, essv9794003, essv9793969, essv9793992, essv9794012, essv9794053, essv9794019, essv9794042, essv9794024, essv9793964, essv9793999, essv9794026, essv9794015, essv9794014, essv9793987, essv9793965, essv9793976, essv9794035, essv9793997, essv9794007, essv9794047, essv9794016, essv9794045, essv9794036, essv9794018, essv9793991, essv9793968, essv9794050, essv9794004, essv9793985, essv9793980, essv9793983, essv9793967, essv9793984, essv9793982, essv9794052, essv9794013, essv9794046, essv9793994, essv9794021, essv9793970, essv9794002, essv9793975, essv9794040, essv9794005, essv9794023, essv9794006, essv9794017, essv9794009, essv9794048, essv9793971, essv9793995, essv9794037, essv9794031, essv9793973, essv9793990, essv9793981, essv9794041, essv9794034, essv9794028, essv9794025, essv9793988, essv9794020, essv9794051, essv9794030, essv9794032, essv9794039, essv9794001, essv9793974, essv9794043, essv9794008, essv9793979, essv9793993, essv9794049 | | Samples | 401033DJ, 400701MM, 401465TB, 401005BL, 401734PG, 401769CR, 40031BA, 400429YF, 402067KS, 401330RR, 400995MS, 400506GN, 401899MB, 401249TP, 400629BM, 400486LS, 401253MC, 401019MP, 402028BD, 400066MA, 400051MR, 400337HG, 400203NA, 402012RR, 401184MM, 401038LN, 400206SC, 402061PI, 400653GP, 400270BD, 400413FJ, 401977ES, 401376RD, 401785MJ, 401084TD, 401274PA, 401623SN, 400838AM, 401357MH, 400285FA, 401326LI, 401930GD, 400686BM, 400547BS, 400387HE, 401889FR, 400422PN, 400319HT, 400258BC, 400721DJ, 401874DJ, 40050SB, 401410BJ, 400378HL, 401359HF, 401057SS, 400728PB, 400624RJ, 401595BL, 400732MA, 401847RK, 400677HD, 400069CN, 400759FV, 401786WD, 401661HD, 401413RG, 401265CB, 400769SL, 400072GR, 401809FU, 400778SR, 401735LE, 401932GN, 401969DR, 400012CJ, 401576WC, 400668TD, 400704LC, 400645KM, 401102RD | | Known Genes | C10orf11 | | Method | SNP array | | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | | Platform | Affymetrix CytoScan HD 2.7M array | | Comments | | | Reference | Uddin_et_al_2014 | | Pubmed ID | 25503493 | | Accession Number(s) | esv3577416
| | Frequency | | Sample Size | 873 | | Observed Gain | 81 | | Observed Loss | 0 | | Observed Complex | 0 | | Frequency | n/a |
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