Variant DetailsVariant: esv3577405 | Internal ID | 18358917 | | Landmark | | | Location Information | | | Cytoband | 10q22.3 | | Allele length | | Assembly | Allele length | | hg38 | 7308 | | hg19 | 7308 |
| | Variant Type | CNV gain | | Copy Number | | | Allele State | | | Allele Origin | | | Probe Count | | | Validation Flag | | | Merged Status | M | | Merged Variants | dgv253e212 | | Supporting Variants | essv9794108, essv9794076, essv9794121, essv9794143, essv9794138, essv9794094, essv9794065, essv9794087, essv9794112, essv9794114, essv9794124, essv9794061, essv9794115, essv9794119, essv9794145, essv9794103, essv9794128, essv9794091, essv9794082, essv9794106, essv9794146, essv9794139, essv9794116, essv9794102, essv9794095, essv9794078, essv9794134, essv9794132, essv9794090, essv9794127, essv9794084, essv9794147, essv9794071, essv9794109, essv9794136, essv9794060, essv9794058, essv9794097, essv9794126, essv9794123, essv9794093, essv9794140, essv9794117, essv9794107, essv9794142, essv9794072, essv9794110, essv9794141, essv9794105, essv9794054, essv9794079, essv9794085, essv9794099, essv9794057, essv9794068, essv9794135, essv9794080, essv9794113, essv9794070, essv9794120, essv9794118, essv9794149, essv9794083, essv9794063, essv9794130, essv9794074, essv9794081, essv9794129, essv9794086, essv9794137, essv9794092, essv9794151, essv9794150, essv9794096, essv9794056, essv9794131, essv9794067, essv9794062, essv9794059, essv9794069, essv9794125, essv9794064, essv9794075, essv9794104, essv9794098, essv9794148, essv9794101, essv9794073 | | Samples | 400801HS, 401021SC, 400063BR, 401489CB, 400105BB, 401956DQ, 400889CM, 401673DM, 400622SJ, 400683EC, 400230TB, 401302LJ, 401195PN, 401468RL, 401434VN, 400277LM, 400347VJ, 401190WC, 402016HZ, 401926MR, 401860TJ, 400675HC, 401695BT, 401869BG, 402065BG, 401401BA, 401252AE, 401766MR, 401155ML, 400817MB, 401550SP, 400385LJ, 400338SR, 401855RE, 400333CC, 402056KD, 401801LA, 400729HC, 401791FG, 401646MC, 401764JJ, 400041LJ, 401347DH, 400007RG, 400515ZG, 401591BE, 401499JR, 401477ST, 401091HS, 401736BF, 401230NL, 400240HJ, 401594MP, 400496BL, 401185LE, 401423BA, 401348RB, 401318AV, 400829MR, 400043HC, 401825TH, 401952UH, 401892MJ, 401414CR, 400249BC, 401919MD, 401940SJ, 401307VR, 400999HR, 400135DR, 401677MM, 400201PK, 401361GG, 400483DP, 400103BN, 402009WP, 401315HK, 401552BK, 401012TP, 401135CS, 400879DS, 401543DC, 401829FJ, 400013TA, 400661AD, 400291VJ, 400138LA, 400091BS | | Known Genes | C10orf11 | | Method | SNP array | | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | | Platform | Affymetrix CytoScan HD 2.7M array | | Comments | | | Reference | Uddin_et_al_2014 | | Pubmed ID | 25503493 | | Accession Number(s) | esv3577405
| | Frequency | | Sample Size | 873 | | Observed Gain | 88 | | Observed Loss | 0 | | Observed Complex | 0 | | Frequency | n/a |
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