A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3577394



Internal ID18358906
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:76493508..76508877hg38UCSC Ensembl
Innerchr10:78253266..78268635hg19UCSC Ensembl
Cytoband10q22.3
Allele length
AssemblyAllele length
hg3815370
hg1915370
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv254e212
Supporting Variantsessv9794265, essv9794312, essv9794324, essv9794292, essv9794302, essv9794307, essv9794326, essv9794291, essv9794315, essv9794283, essv9794279, essv9794314, essv9794295, essv9794296, essv9794269, essv9794287, essv9794323, essv9794313, essv9794290, essv9794298, essv9794289, essv9794282, essv9794294, essv9794276, essv9794285, essv9794297, essv9794273, essv9794284, essv9794316, essv9794308, essv9794270, essv9794300, essv9794303, essv9794321, essv9794293, essv9794319, essv9794325, essv9794275, essv9794317, essv9794263, essv9794306, essv9794281, essv9794286, essv9794264, essv9794271, essv9794267, essv9794280, essv9794268, essv9794274, essv9794272, essv9794305, essv9794309, essv9794304, essv9794278, essv9794318, essv9794301, essv9794320
Samples401474CE, 400920MK, 400927BD, 400145BL, 400101EH, 401487FW, 400574MA, 401117NA, 401299ST, 401079HJ, 401403TD, 401457WK, 400643LD, 400509CJ, 401030GI, 400558BL, 401308LD, 400241CP, 400360SM, 400528LR, 401281BP, 400627CC, 400460DM, 400368SD, 401831TW, 400609FJ, 401495NR, 400344DR, 400109LJ, 400060MC, 400733SW, 400615RI, 400038CK, 401027KW, 400738WM, 401251WN, 401863BD, 401804FG, 401526WB, 401454CD, 400375KA, 400076LC, 401630MK, 400681MC, 401444LD, 400886MP, 400978JG, 400278PD, 400248JO, 400030WD, 401616WP, 400542EG, 400295PS, 401054VM, 402048WB, 401861GG, 401453OL
Known GenesC10orf11
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3577394
Frequency
Sample Size873
Observed Gain57
Observed Loss0
Observed Complex0
Frequencyn/a


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