A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3577360



Internal ID18358872
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:45654763..45881711hg38UCSC Ensembl
Innerchr1:46120435..46347383hg19UCSC Ensembl
Cytoband1p34.1
Allele length
AssemblyAllele length
hg38226949
hg19226949
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9835899
Samples401842BJ
Known GenesGPBP1L1, IPP, MAST2, TMEM69
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3577360
Frequency
Sample Size873
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer