A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3577196



Internal ID18705394
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
InnerchrX:120956725..120981040hg38UCSC Ensembl
InnerchrX:120090579..120114894hg19UCSC Ensembl
CytobandXq24
Allele length
AssemblyAllele length
hg3824316
hg1924316
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv2408e212
Supporting Variantsessv9829980, essv9829972, essv9829979, essv9829974, essv9829973, essv9829971, essv9829975, essv9829970
Samples400432VA, 401261HD, 401742KB, 400191MP, 401173AI, 401869BG, 401105WS, 400255CD
Known GenesCT47A1, CT47A10, CT47A11, CT47A12, CT47A2, CT47A3, CT47A4, CT47A5, CT47A6, CT47A8, CT47A9
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3577196
Frequency
Sample Size873
Observed Gain8
Observed Loss0
Observed Complex0
Frequencyn/a


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