A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3577172



Internal ID18358684
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:45959639..46146408hg38UCSC Ensembl
Innerchr10:51449414..51636197hg19UCSC Ensembl
Cytoband10q11.23
Allele length
AssemblyAllele length
hg38186770
hg19186784
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9793501
Samples401191MI
Known GenesAGAP7, MSMB, NCOA4, TIMM23
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3577172
Frequency
Sample Size873
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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