A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3576782



Internal ID18358294
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
InnerchrX:15805012..15813860hg38UCSC Ensembl
InnerchrX:15823135..15831983hg19UCSC Ensembl
CytobandXp22.2
Allele length
AssemblyAllele length
hg388849
hg198849
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv2229e212
Supporting Variantsessv9823947, essv9823946
Samples400523GB, 401458RT
Known GenesZRSR2
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3576782
Frequency
Sample Size873
Observed Gain2
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer