A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3576260



Internal ID18704458
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:167931773..168192356hg38UCSC Ensembl
Innerchr6:168332453..168593036hg19UCSC Ensembl
Cytoband6q27
Allele length
AssemblyAllele length
hg38260584
hg19260584
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv1853e212
Supporting Variantsessv9782638, essv9782637
Samples401074CM, 401281BP
Known GenesFRMD1, HGC6.3, KIF25, KIF25-AS1, MLLT4
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3576260
Frequency
Sample Size873
Observed Gain2
Observed Loss0
Observed Complex0
Frequencyn/a


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