Variant DetailsVariant: esv3575889Internal ID | 18357401 | Landmark | | Location Information | | Cytoband | 5q33.2 | Allele length | Assembly | Allele length | hg38 | 8394 | hg19 | 8394 |
| Variant Type | CNV gain | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | essv9776573, essv9776572, essv9776569, essv9776570, essv9776571 | Samples | 401856GC, 400834SS, 400503HD, 400598DA, 401358VP | Known Genes | GALNT10 | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | esv3575889
| Frequency | Sample Size | 873 | Observed Gain | 5 | Observed Loss | 0 | Observed Complex | 0 | Frequency | n/a |
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