A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3575678



Internal ID18357190
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr4:10113871..10328704hg38UCSC Ensembl
Innerchr4:10115495..10330328hg19UCSC Ensembl
Cytoband4p16.1
Allele length
AssemblyAllele length
hg38214834
hg19214834
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9770068
Samples400113LD
Known GenesWDR1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3575678
Frequency
Sample Size873
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer