Variant DetailsVariant: esv3574980 Internal ID | 18356492 | Landmark | | Location Information | | Cytoband | Xq28 | Allele length | Assembly | Allele length | hg38 | 2130 | hg19 | 2130 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | essv9833728, essv9833714, essv9833718, essv9833707, essv9833703, essv9833709, essv9833731, essv9833734, essv9833732, essv9833739, essv9833692, essv9833710, essv9833736, essv9833741, essv9833696, essv9833735, essv9833743, essv9833738, essv9833695, essv9833704, essv9833730, essv9833702, essv9833693, essv9833716, essv9833699, essv9833691, essv9833719, essv9833726, essv9833742, essv9833717, essv9833725, essv9833697, essv9833727, essv9833737, essv9833724, essv9833712, essv9833706, essv9833708, essv9833713, essv9833701, essv9833690, essv9833749, essv9833747, essv9833746, essv9833729, essv9833715, essv9833698, essv9833748, essv9833723, essv9833705, essv9833720, essv9833745, essv9833694, essv9833740, essv9833721 | Samples | 400649PS, 400364SS, 401465TB, 401385BB, 401261HD, 400622SJ, 400574MA, 400083TG, 401841OB, 400655WB, 401457WK, 401698SB, 400453LN, 400347VJ, 401500OM, 401190WC, 400528LR, 400669LD, 401842BJ, 400482MD, 400588BE, 401214BJ, 400127MD, 401252AE, 400427SD, 401495NR, 401133JG, 400344DR, 401746WW, 401013GJ, 400929MM, 401870FB, 401623SN, 400240HJ, 401526WB, 401454CD, 400543CK, 401771OS, 400123WN, 401086MD, 401795SP, 401200BD, 401259LS, 400788PV, 401677MM, 401847RK, 401012TP, 401894PD, 401861GG, 4000046CJ, 400106PC, 401105WS, 401781SL, 401969DR, 401612HB | Known Genes | CD99L2 | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | esv3574980
| Frequency | Sample Size | 873 | Observed Gain | 0 | Observed Loss | 55 | Observed Complex | 0 | Frequency | n/a |
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