A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3574835



Internal ID18703033
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
InnerchrX:140722033..140724090hg38UCSC Ensembl
InnerchrX:139804198..139806255hg19UCSC Ensembl
CytobandXq27.1
Allele length
AssemblyAllele length
hg382058
hg192058
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv2494e212
Supporting Variantsessv9832696, essv9832694, essv9832697, essv9832695
Samples400132HN, 401538NS, 400178RH, 400982BS
Known GenesLINC00632
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3574835
Frequency
Sample Size873
Observed Gain0
Observed Loss4
Observed Complex0
Frequencyn/a


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