A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3574591



Internal ID18356103
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
InnerchrX:133310092..133311944hg38UCSC Ensembl
InnerchrX:132444120..132445972hg19UCSC Ensembl
CytobandXq26.2
Allele length
AssemblyAllele length
hg381853
hg191853
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9830535, essv9830537, essv9830536, essv9830538
Samples401518VK, 400385LJ, 400582WS, 400352CA
Known GenesGPC4
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3574591
Frequency
Sample Size873
Observed Gain0
Observed Loss4
Observed Complex0
Frequencyn/a


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