A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3574568



Internal ID18702766
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
InnerchrX:130485570..130488149hg38UCSC Ensembl
InnerchrX:129619544..129622123hg19UCSC Ensembl
CytobandXq26.1
Allele length
AssemblyAllele length
hg382580
hg192580
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9830470, essv9830473, essv9830482, essv9830467, essv9830456, essv9830479, essv9830463, essv9830469, essv9830452, essv9830471, essv9830461, essv9830481, essv9830468, essv9830465, essv9830453, essv9830483, essv9830480, essv9830458, essv9830462, essv9830459, essv9830472, essv9830484, essv9830476, essv9830454, essv9830457, essv9830460, essv9830474, essv9830475, essv9830478, essv9830464
Samples401962BK, 401330RR, 400141CC, 401927SK, 400077EB, 400545EW, 400937OR, 401263HS, 400022WA, 400033KC, 400186WC, 401900RJ, 400093BL, 401864CV, 400076LC, 401892MJ, 401812HG, 400047DS, 400362TV, 400598DA, 400943DV, 400837HN, 400458LS, 401608GE, 401314MK, 4000046CJ, 400930MK, 402008MC, 400879DS, 400261RN
Known Genes
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3574568
Frequency
Sample Size873
Observed Gain0
Observed Loss30
Observed Complex0
Frequencyn/a


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