Variant DetailsVariant: esv3574403 | Internal ID | 18355915 | | Landmark | | | Location Information | | | Cytoband | Xq24 | | Allele length | | Assembly | Allele length | | hg38 | 10407 | | hg19 | 10407 |
| | Variant Type | CNV loss | | Copy Number | | | Allele State | | | Allele Origin | | | Probe Count | | | Validation Flag | | | Merged Status | M | | Merged Variants | | | Supporting Variants | essv9829676, essv9829663, essv9829672, essv9829671, essv9829646, essv9829670, essv9829652, essv9829664, essv9829618, essv9829619, essv9829640, essv9829622, essv9829679, essv9829667, essv9829641, essv9829682, essv9829628, essv9829684, essv9829674, essv9829650, essv9829636, essv9829665, essv9829629, essv9829617, essv9829634, essv9829626, essv9829651, essv9829624, essv9829661, essv9829657, essv9829675, essv9829625, essv9829649, essv9829653, essv9829638, essv9829681, essv9829673, essv9829623, essv9829660, essv9829635, essv9829656, essv9829680, essv9829620, essv9829662, essv9829678, essv9829637, essv9829668, essv9829639, essv9829659, essv9829627, essv9829648, essv9829645, essv9829631, essv9829647, essv9829654, essv9829669, essv9829642, essv9829683, essv9829658, essv9829633, essv9829630 | | Samples | 401474CE, 400911GA, 400649PS, 400987FB, 401275SJ, 401235IA, 400083TG, 400068PW, 401427CB, 401151RJ, 400325BE, 400897MD, 400340CD, 401426WD, 401402EN, 400441GS, 401132CH, 400360SM, 401551MB, 400631SJ, 400773GS, 401831TW, 401495NR, 400836LK, 401994BD, 400653GP, 402056KD, 402029KJ, 401393JW, 401234MB, 401013GJ, 401448BJ, 400825TW, 401939GD, 402033WD, 401444LD, 401075MN, 401812HG, 401443JK, 400854SG, 400422PN, 400999HR, 400450FG, 401884WJ, 401696CG, 401182OC, 401922MW, 401359HF, 400430KV, 400201PK, 401438HT, 401265CB, 400586RD, 400205SP, 402073LQ, 401829FJ, 400177SJ, 400164SS, 400890IT, 400942HR, 401490TL | | Known Genes | IL13RA1 | | Method | SNP array | | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | | Platform | Affymetrix CytoScan HD 2.7M array | | Comments | | | Reference | Uddin_et_al_2014 | | Pubmed ID | 25503493 | | Accession Number(s) | esv3574403
| | Frequency | | Sample Size | 873 | | Observed Gain | 0 | | Observed Loss | 61 | | Observed Complex | 0 | | Frequency | n/a |
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