A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3574380



Internal ID18702578
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
InnerchrX:116322384..116325710hg38UCSC Ensembl
InnerchrX:115453529..115456845hg19UCSC Ensembl
CytobandXq23
Allele length
AssemblyAllele length
hg383327
hg193317
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9829219, essv9829226, essv9829235, essv9829239, essv9829218, essv9829215, essv9829228, essv9829242, essv9829229, essv9829216, essv9829217, essv9829214, essv9829225, essv9829241, essv9829230, essv9829240, essv9829223, essv9829227, essv9829232, essv9829234, essv9829243, essv9829221, essv9829236, essv9829238, essv9829224, essv9829237, essv9829220, essv9829231, essv9829245
Samples400599CP, 401292ER, 400984LD, 400802DP, 400821FE, 400917CG, 400506GN, 401006ES, 400121PL, 400333CC, 401646MC, 400383HL, 400533BB, 400064WJ, 400381CA, 401825TH, 401981GF, 400978JG, 400371GA, 401112LG, 400837HN, 400128MJ, 400769SL, 401809FU, 401100SJ, 401628GC, 401836SI, 400238BB, 400494ML
Known Genes
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3574380
Frequency
Sample Size873
Observed Gain0
Observed Loss29
Observed Complex0
Frequencyn/a


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