A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3574379



Internal ID18702577
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
InnerchrX:116322384..116324739hg38UCSC Ensembl
InnerchrX:115453529..115455874hg19UCSC Ensembl
CytobandXq23
Allele length
AssemblyAllele length
hg382356
hg192346
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv2378e212
Supporting Variantsessv9829202, essv9829203, essv9829212, essv9829210, essv9829207, essv9829209, essv9829208, essv9829206, essv9829205, essv9829204, essv9829213
Samples400145BL, 400218WK, 401714BM, 401617KM, 401318AV, 400006DK, 400846MC, 400329HJ, 402051AF, 4000046CJ, 400269DA
Known Genes
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3574379
Frequency
Sample Size873
Observed Gain0
Observed Loss11
Observed Complex0
Frequencyn/a


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