A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3574208



Internal ID18355720
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr18:80230213..80256240hg38UCSC Ensembl
Innerchr18:77988096..78014123hg19UCSC Ensembl
Cytoband18q23
Allele length
AssemblyAllele length
hg3826028
hg1926028
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9816481
Samples400051MR
Known GenesPARD6G
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3574208
Frequency
Sample Size873
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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