A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3573746



Internal ID18355258
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
InnerchrX:31438150..31440704hg38UCSC Ensembl
InnerchrX:31456267..31458821hg19UCSC Ensembl
CytobandXp21.2
Allele length
AssemblyAllele length
hg382555
hg192555
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv2251e212
Supporting Variantsessv9824834, essv9824835, essv9824836
Samples400622SJ, 400316SL, 400970VE
Known GenesDMD
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3573746
Frequency
Sample Size873
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer