A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3573639



Internal ID18701837
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
InnerchrX:21944304..21946703hg38UCSC Ensembl
InnerchrX:21962422..21964821hg19UCSC Ensembl
CytobandXp22.11
Allele length
AssemblyAllele length
hg382400
hg192400
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9824158, essv9824152, essv9824157, essv9824151, essv9824154, essv9824153, essv9824156
Samples401165SB, 401550SP, 400478WE, 400791GC, 400496BL, 401630MK, 401143LK
Known GenesSMS
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3573639
Frequency
Sample Size873
Observed Gain0
Observed Loss7
Observed Complex0
Frequencyn/a


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