A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3573635



Internal ID18355147
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
InnerchrX:20056269..20062130hg38UCSC Ensembl
InnerchrX:20074387..20080248hg19UCSC Ensembl
CytobandXp22.12
Allele length
AssemblyAllele length
hg385862
hg195862
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9824129, essv9824127, essv9824128, essv9824126, essv9824131, essv9824132, essv9824125, essv9824130
Samples401249TP, 400688FL, 400374LB, 401326LI, 400846MC, 400458LS, 401817MC, 400982BS
Known GenesMAP7D2
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3573635
Frequency
Sample Size873
Observed Gain0
Observed Loss8
Observed Complex0
Frequencyn/a


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