A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3573617



Internal ID18355129
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
InnerchrX:17609969..17611760hg38UCSC Ensembl
InnerchrX:17628089..17629880hg19UCSC Ensembl
CytobandXp22.13
Allele length
AssemblyAllele length
hg381792
hg191792
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9823981, essv9823980
Samples401307VR, 401330RR
Known GenesNHS
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3573617
Frequency
Sample Size873
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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